On the Bachelor’s study programmes of Biology and Ecology, teachers of the Department participate on teaching of compulsory subjects:
General Botany, Botany I (Systematic of ower plants), Botany II (Systematic of higher plants), Plant Physiology and management of theses.

The Department guarantees Master study program of Botany and Plant Physiology, in which teachers of the Department teach compulsory subjects: Plant Taxonomy, Plant Metabolism, Physiology of Plant Growth and Development, Evolutionary Biology and Plant Ecology. Compulsory elective courses and elective courses in this and other study programs are Phytogeography, Mineral Nutrition and Pedology, Plant Embryology, Plant Stress Physiology, Biology of Plant Symbioses, Healing Plants, Seminar from Plant Physiology and Seminar from Botany.

In the doctoral study program of Plant Physiology, there are disciplines: Selected Topics of Plant Physiology, Plant Ecophysiology, Reproductive Plant Biology and Plant Secondary Metabolism.